Search Results: "Greg"

30 November 2023

Dirk Eddelbuettel: RcppSpdlog 0.0.15 on CRAN: Maintenance

Version 0.0.15 of RcppSpdlog is now on CRAN and will be uploaded to Debian. RcppSpdlog bundles spdlog, a wonderful header-only C++ logging library with all the bells and whistles you would want that was written by Gabi Melman, and also includes fmt by Victor Zverovich. You can learn more at the nice package documention site. This releases updates the code to address warning now shown under R-devel when -Wformat -Wformat-security are enabled. This amounted to re-generating RcppExports.cpp under an updated [Rcpp][rcpp] version. It also updates the package default help page by removing some stubs that were not filled in. The NEWS entry for this release follows.

Changes in RcppSpdlog version 0.0.15 (2023-11-29)
  • Correct default package help page slighly
  • RcppExports.cpp has been regenerated under an updated Rcpp to address a format string warning under R-devel

Courtesy of my CRANberries, there is also a diffstat report. More detailed information is on the RcppSpdlog page, or the package documention site. If you like this or other open-source work I do, you can sponsor me at GitHub.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

Dirk Eddelbuettel: qlcal 0.0.9 on CRAN: Maintenance

The ninth release of the qlcal package arrivied at CRAN today. qlcal delivers the calendaring parts of QuantLib. It is provided (for the R package) as a set of included files, so the package is self-contained and does not depend on an external QuantLib library (which can be demanding to build). qlcal covers over sixty country / market calendars and can compute holiday lists, its complement (i.e. business day lists) and much more. This releases updates the code to address warning now shown under R-devel when -Wformat -Wformat-security are enabled. This amounted to re-generating RcppExports.cpp under an updated Rcpp version. We also no longer set C++14 explicitly as a compilation standard but rather determine at build time if it is needed or not.

Changes in version 0.0.9 (2023-11-29)
  • configure now uses a new helper script to only set a compilation standard when needed for R versions older than 4.2.0
  • The file RcppExports.cpp was regenerated to avoid a string format warning from R-devel

Courtesy of my CRANberries, there is a diffstat report for this release. See the project page and package documentation for more details, and more examples. If you like this or other open-source work I do, you can now sponsor me at GitHub.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

Dirk Eddelbuettel: RcppQuantuccia 0.1.1 on CRAN: Maintenance

A minor release of RcppQuantuccia arrived on CRAN today. RcppQuantuccia started from the Quantuccia header-only subset / variant of QuantLib which it brings it to R. This project validated the idea of making the calendaring functionality of QuantLib available in a more compact and standalone project which we now do with qlcal which can be seen as a successor to this. This releases updates the code to address warning now shown under R-devel when -Wformat -Wformat-security are enabled. This amounted to re-generating RcppExports.cpp under an updated Rcpp version. We also no longer set C++14 explicitly as a compilation standard. The complete list changes for this release follows.

Changes in version 0.1.2 (2023-11-29)
  • RcppExports.cpp has been regenerated under an updated Rcpp to address a format string warning under R-devel
  • The compilation standard is no longer set to C++14

Courtesy of CRANberries, there is also a diffstat report relative to the previous release. More information is on the RcppQuantuccia page. Issues and bugreports should go to the GitHub issue tracker. If you like this or other open-source work I do, you can now sponsor me at GitHub.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

28 November 2023

Dirk Eddelbuettel: RcppSimdJson 0.1.11 on CRAN: Maintenance

A new maintenance release 0.1.11 of the RcppSimdJson package is now on CRAN. RcppSimdJson wraps the fantastic and genuinely impressive simdjson library by Daniel Lemire and collaborators. Via very clever algorithmic engineering to obtain largely branch-free code, coupled with modern C++ and newer compiler instructions, it results in parsing gigabytes of JSON parsed per second which is quite mindboggling. The best-case performance is faster than CPU speed as use of parallel SIMD instructions and careful branch avoidance can lead to less than one cpu cycle per byte parsed; see the video of the talk by Daniel Lemire at QCon. This release responds to a CRAN request to address issues now identified by -Wformat -Wformat-security. These are frequently pretty simple changes as it was here: all it took was an call to compileAttributes() from an updated Rcpp version which now injects "%s" as a format string when calling Rf_error(). The (very short) NEWS entry for this release follows.

Changes in version 0.1.11 (2023-11-28)
  • RcppExports.cpp has been regenerated under an update Rcpp to address a print format warning (Dirk in #88).

Courtesy of my CRANberries, there is also a diffstat report for this release. For questions, suggestions, or issues please use the issue tracker at the GitHub repo. If you like this or other open-source work I do, you can now sponsor me at GitHub.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

Dirk Eddelbuettel: RcppCNPy 0.2.12 on CRAN: More Maintenance

A new (and again somewhat minor) maintenance release of the RcppCNPy package arrived on CRAN earlier today. RcppCNPy provides R with read and write access to NumPy files thanks to the cnpy library by Carl Rogers along with Rcpp for the glue to R. Recent changes in r-devel hone in on issues concerning printf format string inaccuracies the compiler can detect via the -Wformat -Wformat-security flags. Two fairly simplye ones were present here and have been addressed. In the time since the last release about twenty months ago two or three other minor packaging and setup details have also been taken care of, details are below.

Changes in version 0.2.12 (2022-11-27)
  • The continuous integration workflow received a trivial update, twice.
  • The C++ compilation standard is now implicit per CRAN and R preference.
  • The CITATION file format has been updated for the current usage.
  • Two print format string issues reported by current R-devel have been addressed.

CRANberries also provides a diffstat report for the latest release. As always, feedback is welcome and the best place to start a discussion may be the GitHub issue tickets page. If you like this or other open-source work I do, you can now sponsor me at GitHub.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

26 November 2023

Dirk Eddelbuettel: RQuantLib 0.4.20 on CRAN: More Maintenance

A new release 0.4.20 of RQuantLib arrived at CRAN earlier today, and has already been uploaded to Debian as well. QuantLib is a rather comprehensice free/open-source library for quantitative finance. RQuantLib connects (some parts of) it to the R environment and language, and has been part of CRAN for more than twenty years (!!) as it was one of the first packages I uploaded there. This release of RQuantLib brings a few more updates for nags triggered by recent changes in the upcoming R release (aka r-devel , usually due in April). The Rd parser now identifies curly braces that lack a preceding macro, usually a typo as it was here which affected three files. The printf (or alike) format checker found two more small issues. The run-time checker for examples was unhappy with the callable bond example so we only run it in interactive mode now. Lastly I had alread commented-out the setting for a C++14 compilation (required by the remaining Boost headers) as C++14 has been the default since R 4.2.0 (with suitable compilers, at least). Those who need it explicitly will have to uncomment the line in src/Makevars.in. Lastly, the expand printf format strings also found a need for a small change in Rcpp so the development version (now 1.0.11.5) has that addressed; the change will be part of Rcpp 1.0.12 in January.

Changes in RQuantLib version 0.4.20 (2023-11-26)
  • Correct three help pages with stray curly braces
  • Correct two printf format strings
  • Comment-out explicit selection of C++14
  • Wrap one example inside 'if (interactive())' to not exceed total running time limit at CRAN checks

Courtesy of my CRANberries, there is also a diffstat report for the this release 0.4.20. As always, more detailed information is on the RQuantLib page. Questions, comments etc should go to the rquantlib-devel mailing list. Issue tickets can be filed at the GitHub repo. If you like this or other open-source work I do, you can now sponsor me at GitHub.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

24 November 2023

Jonathan Dowland: bndcmpr

Last year I put together a Halloween playlist and tried, where possible, to link to the tracks on Bandcamp. At the time, Bandcamp did not offer a Playlist feature; they've since added one, but it's limited to mobile only (and I've found, not a lot of use there either). (I also provided a Spotify playlist. Not all of the tracks in the playlist were available on Spotify, or Bandcamp.) Since then I discovered an independent service bndcmpr which lets you build and share playlists from tracks hosted on Bandcamp. I'm not sure whether it will have longevity, but for now at least, I've ported my Halloween 2022 playlist over to bndcmpr. You can find it here: https://bndcmpr.co/cae6814a, or with any luck, embedded below (if you are reading this post on an aggregation site, or newsreader, it's less likely that this will appear):
I'm overdue cutting the next playlist, theme TBA. Stay tuned.

21 November 2023

Mike Hommey: How I (kind of) killed Mercurial at Mozilla

Did you hear the news? Firefox development is moving from Mercurial to Git. While the decision is far from being mine, and I was barely involved in the small incremental changes that ultimately led to this decision, I feel I have to take at least some responsibility. And if you are one of those who would rather use Mercurial than Git, you may direct all your ire at me. But let's take a step back and review the past 25 years leading to this decision. You'll forgive me for skipping some details and any possible inaccuracies. This is already a long post, while I could have been more thorough, even I think that would have been too much. This is also not an official Mozilla position, only my personal perception and recollection as someone who was involved at times, but mostly an observer from a distance. From CVS to DVCS From its release in 1998, the Mozilla source code was kept in a CVS repository. If you're too young to know what CVS is, let's just say it's an old school version control system, with its set of problems. Back then, it was mostly ubiquitous in the Open Source world, as far as I remember. In the early 2000s, the Subversion version control system gained some traction, solving some of the problems that came with CVS. Incidentally, Subversion was created by Jim Blandy, who now works at Mozilla on completely unrelated matters. In the same period, the Linux kernel development moved from CVS to Bitkeeper, which was more suitable to the distributed nature of the Linux community. BitKeeper had its own problem, though: it was the opposite of Open Source, but for most pragmatic people, it wasn't a real concern because free access was provided. Until it became a problem: someone at OSDL developed an alternative client to BitKeeper, and licenses of BitKeeper were rescinded for OSDL members, including Linus Torvalds (they were even prohibited from purchasing one). Following this fiasco, in April 2005, two weeks from each other, both Git and Mercurial were born. The former was created by Linus Torvalds himself, while the latter was developed by Olivia Mackall, who was a Linux kernel developer back then. And because they both came out of the same community for the same needs, and the same shared experience with BitKeeper, they both were similar distributed version control systems. Interestingly enough, several other DVCSes existed: In this landscape, the major difference Git was making at the time was that it was blazing fast. Almost incredibly so, at least on Linux systems. That was less true on other platforms (especially Windows). It was a game-changer for handling large codebases in a smooth manner. Anyways, two years later, in 2007, Mozilla decided to move its source code not to Bzr, not to Git, not to Subversion (which, yes, was a contender), but to Mercurial. The decision "process" was laid down in two rather colorful blog posts. My memory is a bit fuzzy, but I don't recall that it was a particularly controversial choice. All of those DVCSes were still young, and there was no definite "winner" yet (GitHub hadn't even been founded). It made the most sense for Mozilla back then, mainly because the Git experience on Windows still wasn't there, and that mattered a lot for Mozilla, with its diverse platform support. As a contributor, I didn't think much of it, although to be fair, at the time, I was mostly consuming the source tarballs. Personal preferences Digging through my archives, I've unearthed a forgotten chapter: I did end up setting up both a Mercurial and a Git mirror of the Firefox source repository on alioth.debian.org. Alioth.debian.org was a FusionForge-based collaboration system for Debian developers, similar to SourceForge. It was the ancestor of salsa.debian.org. I used those mirrors for the Debian packaging of Firefox (cough cough Iceweasel). The Git mirror was created with hg-fast-export, and the Mercurial mirror was only a necessary step in the process. By that time, I had converted my Subversion repositories to Git, and switched off SVK. Incidentally, I started contributing to Git around that time as well. I apparently did this not too long after Mozilla switched to Mercurial. As a Linux user, I think I just wanted the speed that Mercurial was not providing. Not that Mercurial was that slow, but the difference between a couple seconds and a couple hundred milliseconds was a significant enough difference in user experience for me to prefer Git (and Firefox was not the only thing I was using version control for) Other people had also similarly created their own mirror, or with other tools. But none of them were "compatible": their commit hashes were different. Hg-git, used by the latter, was putting extra information in commit messages that would make the conversion differ, and hg-fast-export would just not be consistent with itself! My mirror is long gone, and those have not been updated in more than a decade. I did end up using Mercurial, when I got commit access to the Firefox source repository in April 2010. I still kept using Git for my Debian activities, but I now was also using Mercurial to push to the Mozilla servers. I joined Mozilla as a contractor a few months after that, and kept using Mercurial for a while, but as a, by then, long time Git user, it never really clicked for me. It turns out, the sentiment was shared by several at Mozilla. Git incursion In the early 2010s, GitHub was becoming ubiquitous, and the Git mindshare was getting large. Multiple projects at Mozilla were already entirely hosted on GitHub. As for the Firefox source code base, Mozilla back then was kind of a Wild West, and engineers being engineers, multiple people had been using Git, with their own inconvenient workflows involving a local Mercurial clone. The most popular set of scripts was moz-git-tools, to incorporate changes in a local Git repository into the local Mercurial copy, to then send to Mozilla servers. In terms of the number of people doing that, though, I don't think it was a lot of people, probably a few handfuls. On my end, I was still keeping up with Mercurial. I think at that time several engineers had their own unofficial Git mirrors on GitHub, and later on Ehsan Akhgari provided another mirror, with a twist: it also contained the full CVS history, which the canonical Mercurial repository didn't have. This was particularly interesting for engineers who needed to do some code archeology and couldn't get past the 2007 cutoff of the Mercurial repository. I think that mirror ultimately became the official-looking, but really unofficial, mozilla-central repository on GitHub. On a side note, a Mercurial repository containing the CVS history was also later set up, but that didn't lead to something officially supported on the Mercurial side. Some time around 2011~2012, I started to more seriously consider using Git for work myself, but wasn't satisfied with the workflows others had set up for themselves. I really didn't like the idea of wasting extra disk space keeping a Mercurial clone around while using a Git mirror. I wrote a Python script that would use Mercurial as a library to access a remote repository and produce a git-fast-import stream. That would allow the creation of a git repository without a local Mercurial clone. It worked quite well, but it was not able to incrementally update. Other, more complete tools existed already, some of which I mentioned above. But as time was passing and the size and depth of the Mercurial repository was growing, these tools were showing their limits and were too slow for my taste, especially for the initial clone. Boot to Git In the same time frame, Mozilla ventured in the Mobile OS sphere with Boot to Gecko, later known as Firefox OS. What does that have to do with version control? The needs of third party collaborators in the mobile space led to the creation of what is now the gecko-dev repository on GitHub. As I remember it, it was challenging to create, but once it was there, Git users could just clone it and have a working, up-to-date local copy of the Firefox source code and its history... which they could already have, but this was the first officially supported way of doing so. Coincidentally, Ehsan's unofficial mirror was having trouble (to the point of GitHub closing the repository) and was ultimately shut down in December 2013. You'll often find comments on the interwebs about how GitHub has become unreliable since the Microsoft acquisition. I can't really comment on that, but if you think GitHub is unreliable now, rest assured that it was worse in its beginning. And its sustainability as a platform also wasn't a given, being a rather new player. So on top of having this official mirror on GitHub, Mozilla also ventured in setting up its own Git server for greater control and reliability. But the canonical repository was still the Mercurial one, and while Git users now had a supported mirror to pull from, they still had to somehow interact with Mercurial repositories, most notably for the Try server. Git slowly creeping in Firefox build tooling Still in the same time frame, tooling around building Firefox was improving drastically. For obvious reasons, when version control integration was needed in the tooling, Mercurial support was always a no-brainer. The first explicit acknowledgement of a Git repository for the Firefox source code, other than the addition of the .gitignore file, was bug 774109. It added a script to install the prerequisites to build Firefox on macOS (still called OSX back then), and that would print a message inviting people to obtain a copy of the source code with either Mercurial or Git. That was a precursor to current bootstrap.py, from September 2012. Following that, as far as I can tell, the first real incursion of Git in the Firefox source tree tooling happened in bug 965120. A few days earlier, bug 952379 had added a mach clang-format command that would apply clang-format-diff to the output from hg diff. Obviously, running hg diff on a Git working tree didn't work, and bug 965120 was filed, and support for Git was added there. That was in January 2014. A year later, when the initial implementation of mach artifact was added (which ultimately led to artifact builds), Git users were an immediate thought. But while they were considered, it was not to support them, but to avoid actively breaking their workflows. Git support for mach artifact was eventually added 14 months later, in March 2016. From gecko-dev to git-cinnabar Let's step back a little here, back to the end of 2014. My user experience with Mercurial had reached a level of dissatisfaction that was enough for me to decide to take that script from a couple years prior and make it work for incremental updates. That meant finding a way to store enough information locally to be able to reconstruct whatever the incremental updates would be relying on (guess why other tools hid a local Mercurial clone under hood). I got something working rather quickly, and after talking to a few people about this side project at the Mozilla Portland All Hands and seeing their excitement, I published a git-remote-hg initial prototype on the last day of the All Hands. Within weeks, the prototype gained the ability to directly push to Mercurial repositories, and a couple months later, was renamed to git-cinnabar. At that point, as a Git user, instead of cloning the gecko-dev repository from GitHub and switching to a local Mercurial repository whenever you needed to push to a Mercurial repository (i.e. the aforementioned Try server, or, at the time, for reviews), you could just clone and push directly from/to Mercurial, all within Git. And it was fast too. You could get a full clone of mozilla-central in less than half an hour, when at the time, other similar tools would take more than 10 hours (needless to say, it's even worse now). Another couple months later (we're now at the end of April 2015), git-cinnabar became able to start off a local clone of the gecko-dev repository, rather than clone from scratch, which could be time consuming. But because git-cinnabar and the tool that was updating gecko-dev weren't producing the same commits, this setup was cumbersome and not really recommended. For instance, if you pushed something to mozilla-central with git-cinnabar from a gecko-dev clone, it would come back with a different commit hash in gecko-dev, and you'd have to deal with the divergence. Eventually, in April 2020, the scripts updating gecko-dev were switched to git-cinnabar, making the use of gecko-dev alongside git-cinnabar a more viable option. Ironically(?), the switch occurred to ease collaboration with KaiOS (you know, the mobile OS born from the ashes of Firefox OS). Well, okay, in all honesty, when the need of syncing in both directions between Git and Mercurial (we only had ever synced from Mercurial to Git) came up, I nudged Mozilla in the direction of git-cinnabar, which, in my (biased but still honest) opinion, was the more reliable option for two-way synchronization (we did have regular conversion problems with hg-git, nothing of the sort has happened since the switch). One Firefox repository to rule them all For reasons I don't know, Mozilla decided to use separate Mercurial repositories as "branches". With the switch to the rapid release process in 2011, that meant one repository for nightly (mozilla-central), one for aurora, one for beta, and one for release. And with the addition of Extended Support Releases in 2012, we now add a new ESR repository every year. Boot to Gecko also had its own branches, and so did Fennec (Firefox for Mobile, before Android). There are a lot of them. And then there are also integration branches, where developer's work lands before being merged in mozilla-central (or backed out if it breaks things), always leaving mozilla-central in a (hopefully) good state. Only one of them remains in use today, though. I can only suppose that the way Mercurial branches work was not deemed practical. It is worth noting, though, that Mercurial branches are used in some cases, to branch off a dot-release when the next major release process has already started, so it's not a matter of not knowing the feature exists or some such. In 2016, Gregory Szorc set up a new repository that would contain them all (or at least most of them), which eventually became what is now the mozilla-unified repository. This would e.g. simplify switching between branches when necessary. 7 years later, for some reason, the other "branches" still exist, but most developers are expected to be using mozilla-unified. Mozilla's CI also switched to using mozilla-unified as base repository. Honestly, I'm not sure why the separate repositories are still the main entry point for pushes, rather than going directly to mozilla-unified, but it probably comes down to switching being work, and not being a top priority. Also, it probably doesn't help that working with multiple heads in Mercurial, even (especially?) with bookmarks, can be a source of confusion. To give an example, if you aren't careful, and do a plain clone of the mozilla-unified repository, you may not end up on the latest mozilla-central changeset, but rather, e.g. one from beta, or some other branch, depending which one was last updated. Hosting is simple, right? Put your repository on a server, install hgweb or gitweb, and that's it? Maybe that works for... Mercurial itself, but that repository "only" has slightly over 50k changesets and less than 4k files. Mozilla-central has more than an order of magnitude more changesets (close to 700k) and two orders of magnitude more files (more than 700k if you count the deleted or moved files, 350k if you count the currently existing ones). And remember, there are a lot of "duplicates" of this repository. And I didn't even mention user repositories and project branches. Sure, it's a self-inflicted pain, and you'd think it could probably(?) be mitigated with shared repositories. But consider the simple case of two repositories: mozilla-central and autoland. You make autoland use mozilla-central as a shared repository. Now, you push something new to autoland, it's stored in the autoland datastore. Eventually, you merge to mozilla-central. Congratulations, it's now in both datastores, and you'd need to clean-up autoland if you wanted to avoid the duplication. Now, you'd think mozilla-unified would solve these issues, and it would... to some extent. Because that wouldn't cover user repositories and project branches briefly mentioned above, which in GitHub parlance would be considered as Forks. So you'd want a mega global datastore shared by all repositories, and repositories would need to only expose what they really contain. Does Mercurial support that? I don't think so (okay, I'll give you that: even if it doesn't, it could, but that's extra work). And since we're talking about a transition to Git, does Git support that? You may have read about how you can link to a commit from a fork and make-pretend that it comes from the main repository on GitHub? At least, it shows a warning, now. That's essentially the architectural reason why. So the actual answer is that Git doesn't support it out of the box, but GitHub has some backend magic to handle it somehow (and hopefully, other things like Gitea, Girocco, Gitlab, etc. have something similar). Now, to come back to the size of the repository. A repository is not a static file. It's a server with which you negotiate what you have against what it has that you want. Then the server bundles what you asked for based on what you said you have. Or in the opposite direction, you negotiate what you have that it doesn't, you send it, and the server incorporates what you sent it. Fortunately the latter is less frequent and requires authentication. But the former is more frequent and CPU intensive. Especially when pulling a large number of changesets, which, incidentally, cloning is. "But there is a solution for clones" you might say, which is true. That's clonebundles, which offload the CPU intensive part of cloning to a single job scheduled regularly. Guess who implemented it? Mozilla. But that only covers the cloning part. We actually had laid the ground to support offloading large incremental updates and split clones, but that never materialized. Even with all that, that still leaves you with a server that can display file contents, diffs, blames, provide zip archives of a revision, and more, all of which are CPU intensive in their own way. And these endpoints are regularly abused, and cause extra load to your servers, yes plural, because of course a single server won't handle the load for the number of users of your big repositories. And because your endpoints are abused, you have to close some of them. And I'm not mentioning the Try repository with its tens of thousands of heads, which brings its own sets of problems (and it would have even more heads if we didn't fake-merge them once in a while). Of course, all the above applies to Git (and it only gained support for something akin to clonebundles last year). So, when the Firefox OS project was stopped, there wasn't much motivation to continue supporting our own Git server, Mercurial still being the official point of entry, and git.mozilla.org was shut down in 2016. The growing difficulty of maintaining the status quo Slowly, but steadily in more recent years, as new tooling was added that needed some input from the source code manager, support for Git was more and more consistently added. But at the same time, as people left for other endeavors and weren't necessarily replaced, or more recently with layoffs, resources allocated to such tooling have been spread thin. Meanwhile, the repository growth didn't take a break, and the Try repository was becoming an increasing pain, with push times quite often exceeding 10 minutes. The ongoing work to move Try pushes to Lando will hide the problem under the rug, but the underlying problem will still exist (although the last version of Mercurial seems to have improved things). On the flip side, more and more people have been relying on Git for Firefox development, to my own surprise, as I didn't really push for that to happen. It just happened organically, by ways of git-cinnabar existing, providing a compelling experience to those who prefer Git, and, I guess, word of mouth. I was genuinely surprised when I recently heard the use of Git among moz-phab users had surpassed a third. I did, however, occasionally orient people who struggled with Mercurial and said they were more familiar with Git, towards git-cinnabar. I suspect there's a somewhat large number of people who never realized Git was a viable option. But that, on its own, can come with its own challenges: if you use git-cinnabar without being backed by gecko-dev, you'll have a hard time sharing your branches on GitHub, because you can't push to a fork of gecko-dev without pushing your entire local repository, as they have different commit histories. And switching to gecko-dev when you weren't already using it requires some extra work to rebase all your local branches from the old commit history to the new one. Clone times with git-cinnabar have also started to go a little out of hand in the past few years, but this was mitigated in a similar manner as with the Mercurial cloning problem: with static files that are refreshed regularly. Ironically, that made cloning with git-cinnabar faster than cloning with Mercurial. But generating those static files is increasingly time-consuming. As of writing, generating those for mozilla-unified takes close to 7 hours. I was predicting clone times over 10 hours "in 5 years" in a post from 4 years ago, I wasn't too far off. With exponential growth, it could still happen, although to be fair, CPUs have improved since. I will explore the performance aspect in a subsequent blog post, alongside the upcoming release of git-cinnabar 0.7.0-b1. I don't even want to check how long it now takes with hg-git or git-remote-hg (they were already taking more than a day when git-cinnabar was taking a couple hours). I suppose it's about time that I clarify that git-cinnabar has always been a side-project. It hasn't been part of my duties at Mozilla, and the extent to which Mozilla supports git-cinnabar is in the form of taskcluster workers on the community instance for both git-cinnabar CI and generating those clone bundles. Consequently, that makes the above git-cinnabar specific issues a Me problem, rather than a Mozilla problem. Taking the leap I can't talk for the people who made the proposal to move to Git, nor for the people who put a green light on it. But I can at least give my perspective. Developers have regularly asked why Mozilla was still using Mercurial, but I think it was the first time that a formal proposal was laid out. And it came from the Engineering Workflow team, responsible for issue tracking, code reviews, source control, build and more. It's easy to say "Mozilla should have chosen Git in the first place", but back in 2007, GitHub wasn't there, Bitbucket wasn't there, and all the available options were rather new (especially compared to the then 21 years-old CVS). I think Mozilla made the right choice, all things considered. Had they waited a couple years, the story might have been different. You might say that Mozilla stayed with Mercurial for so long because of the sunk cost fallacy. I don't think that's true either. But after the biggest Mercurial repository hosting service turned off Mercurial support, and the main contributor to Mercurial going their own way, it's hard to ignore that the landscape has evolved. And the problems that we regularly encounter with the Mercurial servers are not going to get any better as the repository continues to grow. As far as I know, all the Mercurial repositories bigger than Mozilla's are... not using Mercurial. Google has its own closed-source server, and Facebook has another of its own, and it's not really public either. With resources spread thin, I don't expect Mozilla to be able to continue supporting a Mercurial server indefinitely (although I guess Octobus could be contracted to give a hand, but is that sustainable?). Mozilla, being a champion of Open Source, also doesn't live in a silo. At some point, you have to meet your contributors where they are. And the Open Source world is now majoritarily using Git. I'm sure the vast majority of new hires at Mozilla in the past, say, 5 years, know Git and have had to learn Mercurial (although they arguably didn't need to). Even within Mozilla, with thousands(!) of repositories on GitHub, Firefox is now actually the exception rather than the norm. I should even actually say Desktop Firefox, because even Mobile Firefox lives on GitHub (although Fenix is moving back in together with Desktop Firefox, and the timing is such that that will probably happen before Firefox moves to Git). Heck, even Microsoft moved to Git! With a significant developer base already using Git thanks to git-cinnabar, and all the constraints and problems I mentioned previously, it actually seems natural that a transition (finally) happens. However, had git-cinnabar or something similarly viable not existed, I don't think Mozilla would be in a position to take this decision. On one hand, it probably wouldn't be in the current situation of having to support both Git and Mercurial in the tooling around Firefox, nor the resource constraints related to that. But on the other hand, it would be farther from supporting Git and being able to make the switch in order to address all the other problems. But... GitHub? I hope I made a compelling case that hosting is not as simple as it can seem, at the scale of the Firefox repository. It's also not Mozilla's main focus. Mozilla has enough on its plate with the migration of existing infrastructure that does rely on Mercurial to understandably not want to figure out the hosting part, especially with limited resources, and with the mixed experience hosting both Mercurial and git has been so far. After all, GitHub couldn't even display things like the contributors' graph on gecko-dev until recently, and hosting is literally their job! They still drop the ball on large blames (thankfully we have searchfox for those). Where does that leave us? Gitlab? For those criticizing GitHub for being proprietary, that's probably not open enough. Cloud Source Repositories? "But GitHub is Microsoft" is a complaint I've read a lot after the announcement. Do you think Google hosting would have appealed to these people? Bitbucket? I'm kind of surprised it wasn't in the list of providers that were considered, but I'm also kind of glad it wasn't (and I'll leave it at that). I think the only relatively big hosting provider that could have made the people criticizing the choice of GitHub happy is Codeberg, but I hadn't even heard of it before it was mentioned in response to Mozilla's announcement. But really, with literal thousands of Mozilla repositories already on GitHub, with literal tens of millions repositories on the platform overall, the pragmatic in me can't deny that it's an attractive option (and I can't stress enough that I wasn't remotely close to the room where the discussion about what choice to make happened). "But it's a slippery slope". I can see that being a real concern. LLVM also moved its repository to GitHub (from a (I think) self-hosted Subversion server), and ended up moving off Bugzilla and Phabricator to GitHub issues and PRs four years later. As an occasional contributor to LLVM, I hate this move. I hate the GitHub review UI with a passion. At least, right now, GitHub PRs are not a viable option for Mozilla, for their lack of support for security related PRs, and the more general shortcomings in the review UI. That doesn't mean things won't change in the future, but let's not get too far ahead of ourselves. The move to Git has just been announced, and the migration has not even begun yet. Just because Mozilla is moving the Firefox repository to GitHub doesn't mean it's locked in forever or that all the eggs are going to be thrown into one basket. If bridges need to be crossed in the future, we'll see then. So, what's next? The official announcement said we're not expecting the migration to really begin until six months from now. I'll swim against the current here, and say this: the earlier you can switch to git, the earlier you'll find out what works and what doesn't work for you, whether you already know Git or not. While there is not one unique workflow, here's what I would recommend anyone who wants to take the leap off Mercurial right now: As there is no one-size-fits-all workflow, I won't tell you how to organize yourself from there. I'll just say this: if you know the Mercurial sha1s of your previous local work, you can create branches for them with:
$ git branch <branch_name> $(git cinnabar hg2git <hg_sha1>)
At this point, you should have everything available on the Git side, and you can remove the .hg directory. Or move it into some empty directory somewhere else, just in case. But don't leave it here, it will only confuse the tooling. Artifact builds WILL be confused, though, and you'll have to ./mach configure before being able to do anything. You may also hit bug 1865299 if your working tree is older than this post. If you have any problem or question, you can ping me on #git-cinnabar or #git on Matrix. I'll put the instructions above somewhere on wiki.mozilla.org, and we can collaboratively iterate on them. Now, what the announcement didn't say is that the Git repository WILL NOT be gecko-dev, doesn't exist yet, and WON'T BE COMPATIBLE (trust me, it'll be for the better). Why did I make you do all the above, you ask? Because that won't be a problem. I'll have you covered, I promise. The upcoming release of git-cinnabar 0.7.0-b1 will have a way to smoothly switch between gecko-dev and the future repository (incidentally, that will also allow to switch from a pure git-cinnabar clone to a gecko-dev one, for the git-cinnabar users who have kept reading this far). What about git-cinnabar? With Mercurial going the way of the dodo at Mozilla, my own need for git-cinnabar will vanish. Legitimately, this begs the question whether it will still be maintained. I can't answer for sure. I don't have a crystal ball. However, the needs of the transition itself will motivate me to finish some long-standing things (like finalizing the support for pushing merges, which is currently behind an experimental flag) or implement some missing features (support for creating Mercurial branches). Git-cinnabar started as a Python script, it grew a sidekick implemented in C, which then incorporated some Rust, which then cannibalized the Python script and took its place. It is now close to 90% Rust, and 10% C (if you don't count the code from Git that is statically linked to it), and has sort of become my Rust playground (it's also, I must admit, a mess, because of its history, but it's getting better). So the day to day use with Mercurial is not my sole motivation to keep developing it. If it were, it would stay stagnant, because all the features I need are there, and the speed is not all that bad, although I know it could be better. Arguably, though, git-cinnabar has been relatively stagnant feature-wise, because all the features I need are there. So, no, I don't expect git-cinnabar to die along Mercurial use at Mozilla, but I can't really promise anything either. Final words That was a long post. But there was a lot of ground to cover. And I still skipped over a bunch of things. I hope I didn't bore you to death. If I did and you're still reading... what's wrong with you? ;) So this is the end of Mercurial at Mozilla. So long, and thanks for all the fish. But this is also the beginning of a transition that is not easy, and that will not be without hiccups, I'm sure. So fasten your seatbelts (plural), and welcome the change. To circle back to the clickbait title, did I really kill Mercurial at Mozilla? Of course not. But it's like I stumbled upon a few sparks and tossed a can of gasoline on them. I didn't start the fire, but I sure made it into a proper bonfire... and now it has turned into a wildfire. And who knows? 15 years from now, someone else might be looking back at how Mozilla picked Git at the wrong time, and that, had we waited a little longer, we would have picked some yet to come new horse. But hey, that's the tech cycle for you.

4 November 2023

Dirk Eddelbuettel: RcppEigen 0.3.3.9.4 on CRAN: Maintenance, Matrix Changes

A new release 0.3.3.9.4 of RcppEigen arrived on CRAN yesterday, and went to Debian today. Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms. This update contains a small amount of the usual maintenance (see below), along with a very nice pull request by Mikael Jagan which simplifies to interface with the Matrix package and inparticular the CHOLMOD library that is part of SuiteSparse. This release is coordinated with lme4 and OpenMx which are also being updated. The complete NEWS file entry follows.

Changes in RcppEigen version 0.3.3.9.4 (2023-11-01)
  • The CITATION file has been updated for the new bibentry style.
  • The package skeleton generator has been updated and no longer sets an Imports:.
  • Some README.md URLs and badged have been updated.
  • The use of -fopenmp has been documented in Makevars, and a simple thread-count reporting function has been added.
  • The old manual src/init.c has been replaced by an autogenerated version, the RcppExports file have regenerated
  • The interface to package Matrix has been updated and simplified thanks to an excllent patch by Mikael Jagan.
  • The new upload is coordinated with packages lme4 and OpenMx.

Courtesy of CRANberries, there is also a diffstat report for the most recent release. If you like this or other open-source work I do, you can sponsor me at GitHub.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

1 November 2023

Dirk Eddelbuettel: RcppArmadillo 0.12.6.6.0 on CRAN: Bugfix, Thread Throttling

armadillo image Armadillo is a powerful and expressive C++ template library for linear algebra and scientific computing. It aims towards a good balance between speed and ease of use, has a syntax deliberately close to Matlab, and is useful for algorithm development directly in C++, or quick conversion of research code into production environments. RcppArmadillo integrates this library with the R environment and language and is widely used by (currently) 1110 other packages on CRAN, downloaded 31.2 million times (per the partial logs from the cloud mirrors of CRAN), and the CSDA paper (preprint / vignette) by Conrad and myself has been cited 563 times according to Google Scholar. This release brings upstream bugfix releases 12.6.5 (sparse matrix corner case) and 12.6.6 with an ARPACK correction. Conrad released it this this morning, I had been running reverse dependency checks anyway and knew we were in good shape so for once I did not await a full run against the now over 1100 (!!) packages using RcppArmadillo. This release also contains a change I prepared on Sunday and which helps with much-criticized (and rightly I may add) insistence by CRAN concerning throttling . The motivation is understandable: CRAN tests many packages at once on beefy servers and can ill afford tests going off and requesting numerous cores. But rather than providing a global setting at their end, CRAN insists that each package (!!) deals with this. The recent traffic on the helpful-as-ever r-pkg-devel mailing clearly shows that this confuses quite a few package developers. Some have admitted to simply turning examples and tests off: a net loss for all of us. Now, Armadillo defaults to using up to eight cores (which is enough to upset CRAN) when running with OpenMP (which is generally only on Linux for reasons I rather not get into ). With this release I expose a helper functions (from OpenMP) to limit this. I also set up an example package and repo RcppArmadilloOpenMPEx detailing this, and added a demonstration of how to use the new throttlers to the fastLm example. I hope this proves useful to users of the package. The set of changes since the last CRAN release follows.

Changes in RcppArmadillo version 0.12.6.6.0 (2023-10-31)
  • Upgraded to Armadillo release 12.6.6 (Cortisol Retox)
    • Fix eigs_sym(), eigs_gen() and svds() to generate deterministic results in ARPACK mode
  • Add helper functions to set and get the number of OpenMP threads
  • Store initial thread count at package load and use in thread-throttling helper (and resetter) suitable for CRAN constraints

Changes in RcppArmadillo version 0.12.6.5.0 (2023-10-14)
  • Upgraded to Armadillo release 12.6.5 (Cortisol Retox)
    • Fix for corner-case bug in handling sparse matrices with no non-zero elements

Courtesy of my CRANberries, there is a diffstat report relative to previous release. More detailed information is on the RcppArmadillo page. Questions, comments etc should go to the rcpp-devel mailing list off the Rcpp R-Forge page. If you like this or other open-source work I do, you can sponsor me at GitHub.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

21 October 2023

Dirk Eddelbuettel: qlcal 0.0.8 on CRAN: QuantLib 1.32 Updates

The eighth release of the still fairly new qlcal package arrivied at CRAN today. qlcal delivers the calendaring parts of QuantLib. It is provided (for the R package) as a set of included files, so the package is self-contained and does not depend on an external QuantLib library (which can be demanding to build). qlcal covers over sixty country / market calendars and can compute holiday lists, its complement (i.e. business day lists) and much more. This release brings updates from the just-released QuantLib 1.32 version. It also avoids a nag from R during build ( only specify C++14 if you really need it ) but switching to a versioned depends on R 4.2.0 or later. This implies C++14 or later as the default. If you need qlcal on an older R, grab the sources, edit DESCRIPTION to remove this constraint and set the standard as before in src/Makevars (or src/Makevars.win).

Changes in version 0.0.8 (2023-10-21)
  • A small set of updates from QuantLib 1.32 have been applied
  • The explicit C++14 compilation standard has been replaced with an implicit one by relying on R (>= 4.2.0)

Courtesy of my CRANberries, there is a diffstat report for this release. See the project page and package documentation for more details, and more examples. If you like this or other open-source work I do, you can now sponsor me at GitHub.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

15 October 2023

Russ Allbery: Review: A Killing Frost

Review: A Killing Frost, by Seanan McGuire
Series: October Daye #14
Publisher: DAW
Copyright: 2020
ISBN: 0-7564-1253-6
Format: Kindle
Pages: 351
A Killing Frost is the 14th book in the October Daye urban fantasy series and a direct plot sequel to the events of The Brightest Fell. You definitely cannot start here. This review has some relationship spoilers here for things that you would be expecting after the first five or six books, but which you wouldn't know when reading the first few books of the series. If you haven't started the series yet but plan to, consider skipping this review; if you haven't started reading this series, it will probably be meaningless anyway. Finally, events seem to have slowed, enough trauma has been healed, and Toby is able to seriously consider getting married. However, no sooner is the thought voiced than fae politics injects itself yet again. In order to get married without creating potentially substantial future problems for herself and her family, Toby will have to tie up some loose ends. Since one of those loose ends is a price from the Luidaeg that has been haunting her family for decades, this is easier said than done. The Brightest Fell had a very unsatisfying ending. This, after a two book interlude, is the proper end to that story. I picked this up when I had a bunch of stressful things going on and I wanted to be entertained without having to do much work as a reader. Once again, this series delivered exactly that. The writing is repetitive and a bit clunky, McGuire hammers the same emotional points into the ground, and one does wonder about Toby's tendency to emulate a half-human battering ram, but every book has me engrossed and turning the pages. Everyone should have at least one book series on the go that offers reliable, low-effort entertainment. The initial lever that McGuire uses to push Toby into this plot (fae marriage requirements that had never previously been mentioned) felt rather strained and arbitrary, and I spent the first part of the book grumbling a bit about it. However, there is a better reason for this complication that is revealed with time, and which implies some interesting things about how the fae see heroes and how they use them to solve problems. Now I'm wondering if McGuire will explore that some more in later books. This is the "all is revealed" book about Simon Torquill. As we get later into the series, these "all is revealed" books are coming more frequently. So far, I'm finding the revelations satisfying, which is a lot harder than it looks with a series this long and with this many hidden details. There are a few directions the series is taking that aren't my favorite (the Daoine Sidhe obsession with being the Best Fae is getting a bit boring, for example), but none of them seem egregiously off, and I'm deeply invested in the answers to the remaining questions. Toby hits a personal record here for not explaining the dangerous things she's doing because people might talk her out of it. It makes for a tense and gripping climax, but wow I felt for her friends and family, and substantial parts of that risk seemed unnecessary. This is pointed out to her in no uncertain terms, and I'm wondering if it will finally stick. Toby's tendency to solve complicated problems by bleeding on them is part of what gives this series its charm, but I wouldn't mind her giving other people more of a chance to come up with better plans. I did not like this one as well as the previous two books, mostly because I prefer the Luidaeg-centric stories to the Daoine-Sidhe-centric stories, but if you're enjoying the series to this point, this won't be an exception. It's a substantial improvement on The Brightest Fell and did a lot to salvage that story for me, although there are still some aspects of it that need better explanations. Followed by When Sorrows Come. As usual, there is a novella included in at least the Kindle edition. "Shine in Pearl": I was again hoping for more Gillian, but alas. Instead, and breaking with the tendency for the novellas to be side stories unrelated to the main novel, this fleshes out Simon's past and the other primary relationship driving the novel's plot. It's... fine? The best parts by far are the scenes from Dianda's viewpoint, which are just as refreshingly blunt as Dianda is elsewhere. Neither of the other two characters are favorites of mine, and since the point of the story is to describe the tragedy that is resolved in the plot of the main novel, it's somewhat depressing. Not my favorite of the novellas; not the worst of them. (6) Rating: 7 out of 10

12 October 2023

Reproducible Builds: Reproducible Builds in September 2023

Welcome to the September 2023 report from the Reproducible Builds project In these reports, we outline the most important things that we have been up to over the past month. As a quick recap, whilst anyone may inspect the source code of free software for malicious flaws, almost all software is distributed to end users as pre-compiled binaries.
Andreas Herrmann gave a talk at All Systems Go 2023 titled Fast, correct, reproducible builds with Nix and Bazel . Quoting from the talk description:

You will be introduced to Google s open source build system Bazel, and will learn how it provides fast builds, how correctness and reproducibility is relevant, and how Bazel tries to ensure correctness. But, we will also see where Bazel falls short in ensuring correctness and reproducibility. You will [also] learn about the purely functional package manager Nix and how it approaches correctness and build isolation. And we will see where Bazel has an advantage over Nix when it comes to providing fast feedback during development.
Andreas also shows how you can get the best of both worlds and combine Nix and Bazel, too. A video of the talk is available.
diffoscope is our in-depth and content-aware diff utility that can locate and diagnose reproducibility issues. This month, Chris Lamb fixed compatibility with file(1) version 5.45 [ ] and updated some documentation [ ]. In addition, Vagrant Cascadian extended support for GNU Guix [ ][ ] and updated the version in that distribution as well. [ ].
Yet another reminder that our upcoming Reproducible Builds Summit is set to take place from October 31st November 2nd 2023 in Hamburg, Germany. If you haven t been before, our summits are a unique gathering that brings together attendees from diverse projects, united by a shared vision of advancing the Reproducible Builds effort. During this enriching event, participants will have the opportunity to engage in discussions, establish connections and exchange ideas to drive progress in this vital field. If you re interested in joining us this year, please make sure to read the event page, the news item, or the invitation email that Mattia Rizzolo sent out recently, all of which have more details about the event and location. We are also still looking for sponsors to support the event, so please reach out to the organising team if you are able to help. Also note that PackagingCon 2023 is taking place in Berlin just before our summit.
On the Reproducible Builds website, Greg Chabala updated the JVM-related documentation to update a link to the BUILDSPEC.md file. [ ] And Fay Stegerman fixed the builds failing because of a YAML syntax error.

Distribution work In Debian, this month: September saw F-Droid add ten new reproducible apps, and one existing app switched to reproducible builds. In addition, two reproducible apps were archived and one was disabled for a current total of 199 apps published with Reproducible Builds and using the upstream developer s signature. [ ] In addition, an extensive blog post was posted on f-droid.org titled Reproducible builds, signing keys, and binary repos .

Upstream patches The Reproducible Builds project detects, dissects and attempts to fix as many currently-unreproducible packages as possible. We endeavour to send all of our patches upstream where appropriate. This month, we wrote a large number of such patches, including:

Testing framework The Reproducible Builds project operates a comprehensive testing framework (available at tests.reproducible-builds.org) in order to check packages and other artifacts for reproducibility. In August, a number of changes were made by Holger Levsen:
  • Disable armhf and i386 builds due to Debian bug #1052257. [ ][ ][ ][ ]
  • Run diffoscope with a lower ionice priority. [ ]
  • Log every build in a simple text file [ ] and create persistent stamp files when running diffoscope to ease debugging [ ].
  • Run schedulers one hour after dinstall again. [ ]
  • Temporarily use diffoscope from the host, and not from a schroot running the tested suite. [ ][ ]
  • Fail the diffoscope distribution test if the diffoscope version cannot be determined. [ ]
  • Fix a spelling error in the email to IRC gateway. [ ]
  • Force (and document) the reconfiguration of all jobs, due to the recent rise of zombies. [ ][ ][ ][ ]
  • Deal with a rare condition when killing processes which should not be there. [ ]
  • Install the Debian backports kernel in an attempt to address Debian bug #1052257. [ ][ ]
In addition, Mattia Rizzolo fixed a call to diffoscope --version (as suggested by Fay Stegerman on our mailing list) [ ], worked on an openQA credential issue [ ] and also made some changes to the machine-readable reproducible metadata, reproducible-tracker.json [ ]. Lastly, Roland Clobus added instructions for manual configuration of the openQA secrets [ ].

If you are interested in contributing to the Reproducible Builds project, please visit our Contribute page on our website. However, you can get in touch with us via:

10 October 2023

Dirk Eddelbuettel: drat 0.2.4 on CRAN: Improved macOS Support, General Updates

drat user A new minor release of the drat package arrived on CRAN today making it the first release in one and a half years. drat stands for drat R Archive Template, and helps with easy-to-create and easy-to-use repositories for R packages. Since its inception in early 2015 it has found reasonably widespread adoption among R users because repositories with marked releases is the better way to distribute code. Because for once it really is as your mother told you: Friends don t let friends install random git commit snapshots. Properly rolled-up releases it is. Just how CRAN shows us: a model that has demonstrated for two-plus decades how to do this. And you can too: drat is easy to use, documented by six vignettes and just works. Detailed information about drat is at its documentation site. Two more blog posts using drat from GitHub Actions were just added today showing, respectively, how to add to a drat repo in either push or pull mode. This release contains two extended PRs contributed by drat users! Both extended support for macOS: Joey Reid extended M1 support to pruning and archival, and Arne Johannes added bug-sur support. I polished a few more things around the edges, mostly documentation or continuos-integrations related. The NEWS file summarises the release as follows:

Changes in drat version 0.2.4 (2023-10-09)
  • macOS Arm M1 repos are now also supported in pruning and archival (Joey Reid in #135 fixing #134)
  • A minor vignette typo was fixed (Dirk)
  • A small error with setwd() in insertPackage() was corrected (Dirk)
  • macOS x86_64 repos (on big-sur) are now supported too (Arne Johannes Holmin in #139 fixing #138)
  • A few small maintenance tweaks were applied to the CI setup, and to the main README.md

Courtesy of my CRANberries, there is a comparison to the previous release. More detailed information is on the drat page as well as at the documentation site. If you like this or other open-source work I do, you can sponsor me at GitHub.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

20 September 2023

Dirk Eddelbuettel: RcppInt64 0.0.3 on CRAN: Now with nanotime Support

The still new package RcppInt64 (announced two weeks ago in this post, with this followup last week) arrived on CRAN earlier today in its second update and relase 0.0.3. RcppInt64 collects some of the previous conversions between 64-bit integer values in R and C++, and regroups them in a single package by providing a single header. It offers two interfaces: both a more standard as<>() converter from R values along with its companions wrap() to return to R, as well as more dedicated functions from and to . This release adds support for the corresponding nanotime conversion between R and C++. nanotime is leveraging the same bit64-based reprensentation of 64-bit integers for nanosecond resolution timestamps. A thorough S4 wrapping the offers R based access for convenient and powerful operations at nanosecond resolution. And as tweeted (here and here), tooted (here and here), and skeeted (here and here) in a quick preview last Sunday, it makes for easy and expressive code. The brief NEWS entry follows:

Changes in version 0.0.3 (2023-09-19)
  • The as<>() and wrap() converters are now declared inline.
  • Conversion to and from nanotime has been added.

Courtesy of my CRANberries, there is a diffstat report relative to previous release. If you like this or other open-source work I do, you can sponsor me at GitHub.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

12 September 2023

Dirk Eddelbuettel: RcppInt64 0.0.2 on CRAN: Small Update

The still very new package RcppInt64 (announced a week ago in this post) arrived on CRAN earlier today in its first update, now at 0.0.2. RcppInt64 collects some of the previous conversions between 64-bit integer values in R and C++, and regroups them in a single package by providing a single header. It offers two interfaces: both a more standard as<>() converter from R values along with its companions wrap() to return to R, as well as more dedicated functions from and to . The package by now has its first user as we rearranged RcppFarmHash to use it. The change today makes bit64 a weak rather than strong dependency as we use it only for tests and illustrations. We also added two missing fields to DESCRIPTION and added badges to README.md. The brief NEWS entry follows:

Changes in version 0.0.2 (2023-09-12)
  • DESCRIPTION has been extended, badges have been added to README.md
  • Package bit64 is now a Suggests:

Courtesy of my CRANberries, there is a [diffstat report relative to previous release][this release]. If you like this or other open-source work I do, you can sponsor me at GitHub.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

11 September 2023

Dirk Eddelbuettel: RcppArmadillo 0.12.6.4.0 on CRAN: Another Upstream Bugfix

armadillo image Armadillo is a powerful and expressive C++ template library for linear algebra and scientific computing. It aims towards a good balance between speed and ease of use, has a syntax deliberately close to Matlab, and is useful for algorithm development directly in C++, or quick conversion of research code into production environments. RcppArmadillo integrates this library with the R environment and language and is widely used by (currently) 1096 other packages on CRAN, downloaded 30.5 million times (per the partial logs from the cloud mirrors of CRAN), and the CSDA paper (preprint / vignette) by Conrad and myself has been cited 552 times according to Google Scholar. This release brings bugfix upstream release 12.6.4. Conrad prepared this a few days ago; it takes me the usual day or so to run reverse-dependency check against the by-now almost 1100 CRAN packages using RcppArmadillo. And this time, CRAN thought it had found two issues when I submitted and it took two more days til we were all clear about those two being false positives (as can, and does, happen). So today it reached CRAN. The set of changes follows.

Changes in RcppArmadillo version 0.12.6.4.0 (2023-09-06)
  • Upgraded to Armadillo release 12.6.4 (Cortisol Retox)
    • Workarounds for bugs in Apple accelerate framework
    • Fix incorrect calculation of rcond for band matrices in solve()
    • Remove expensive and seldom used optimisations, leading to faster compilation times

Courtesy of my CRANberries, there is a diffstat report relative to previous release. More detailed information is on the RcppArmadillo page. Questions, comments etc should go to the rcpp-devel mailing list off the Rcpp R-Forge page. If you like this or other open-source work I do, you can sponsor me at GitHub.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

9 September 2023

Dirk Eddelbuettel: RcppFarmHash 0.0.3 on CRAN: Small Update

A minor maintenance release of the RcppFarmHash package is now on CRAN as version 0.0.3. RcppFarmHash wraps the Google FarmHash family of hash functions (written by Geoff Pike and contributors) that are used for example by Google BigQuery for the FARM_FINGERPRINT digest. This releases farms out the conversion to the integer64 add-on type in R to the new package RcppInt64 released a few days ago and adds some minor maintenance on continuous integration and alike. The brief NEWS entry follows:

Changes in version 0.0.3 (2023-09-09)
  • Rely on new RcppInt64 package and its header for conversion
  • Minor updates to continuous integration and README.md

If you like this or other open-source work I do, you can sponsor me at GitHub.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

8 September 2023

Reproducible Builds: Reproducible Builds in August 2023

Welcome to the August 2023 report from the Reproducible Builds project! In these reports we outline the most important things that we have been up to over the past month. As a quick recap, whilst anyone may inspect the source code of free software for malicious flaws, almost all software is distributed to end users as pre-compiled binaries. The motivation behind the reproducible builds effort is to ensure no flaws have been introduced during this compilation process by promising identical results are always generated from a given source, thus allowing multiple third-parties to come to a consensus on whether a build was compromised. If you are interested in contributing to the project, please visit our Contribute page on our website.

Rust serialisation library moving to precompiled binaries Bleeping Computer reported that Serde, a popular Rust serialization framework, had decided to ship its serde_derive macro as a precompiled binary. As Ax Sharma writes:
The move has generated a fair amount of push back among developers who worry about its future legal and technical implications, along with a potential for supply chain attacks, should the maintainer account publishing these binaries be compromised.
After intensive discussions, use of the precompiled binary was phased out.

Reproducible builds, the first ten years On August 4th, Holger Levsen gave a talk at BornHack 2023 on the Danish island of Funen titled Reproducible Builds, the first ten years which promised to contain:
[ ] an overview about reproducible builds, the past, the presence and the future. How it started with a small [meeting] at DebConf13 (and before), how it grew from being a Debian effort to something many projects work on together, until in 2021 it was mentioned in an executive order of the president of the United States. (HTML slides)
Holger repeated the talk later in the month at Chaos Communication Camp 2023 in Zehdenick, Germany: A video of the talk is available online, as are the HTML slides.

Reproducible Builds Summit Just another reminder that our upcoming Reproducible Builds Summit is set to take place from October 31st November 2nd 2023 in Hamburg, Germany. Our summits are a unique gathering that brings together attendees from diverse projects, united by a shared vision of advancing the Reproducible Builds effort. During this enriching event, participants will have the opportunity to engage in discussions, establish connections and exchange ideas to drive progress in this vital field. If you re interested in joining us this year, please make sure to read the event page, the news item, or the invitation email that Mattia Rizzolo sent out, which have more details about the event and location. We are also still looking for sponsors to support the event, so do reach out to the organizing team if you are able to help. (Also of note that PackagingCon 2023 is taking place in Berlin just before our summit, and their schedule has just been published.)

Vagrant Cascadian on the Sustain podcast Vagrant Cascadian was interviewed on the SustainOSS podcast on reproducible builds:
Vagrant walks us through his role in the project where the aim is to ensure identical results in software builds across various machines and times, enhancing software security and creating a seamless developer experience. Discover how this mission, supported by the Software Freedom Conservancy and a broad community, is changing the face of Linux distros, Arch Linux, openSUSE, and F-Droid. They also explore the challenges of managing random elements in software, and Vagrant s vision to make reproducible builds a standard best practice that will ideally become automatic for users. Vagrant shares his work in progress and their commitment to the last mile problem.
The episode is available to listen (or download) from the Sustain podcast website. As it happens, the episode was recorded at FOSSY 2023, and the video of Vagrant s talk from this conference (Breaking the Chains of Trusting Trust is now available on Archive.org: It was also announced that Vagrant Cascadian will be presenting at the Open Source Firmware Conference in October on the topic of Reproducible Builds All The Way Down.

On our mailing list Carles Pina i Estany wrote to our mailing list during August with an interesting question concerning the practical steps to reproduce the hello-traditional package from Debian. The entire thread can be viewed from the archive page, as can Vagrant Cascadian s reply.

Website updates Rahul Bajaj updated our website to add a series of environment variations related to reproducible builds [ ], Russ Cox added the Go programming language to our projects page [ ] and Vagrant Cascadian fixed a number of broken links and typos around the website [ ][ ][ ].

Software development In diffoscope development this month, versions 247, 248 and 249 were uploaded to Debian unstable by Chris Lamb, who also added documentation for the new specialize_as method and expanding the documentation of the existing specialize as well [ ]. In addition, Fay Stegerman added specialize_as and used it to optimise .smali comparisons when decompiling Android .apk files [ ], Felix Yan and Mattia Rizzolo corrected some typos in code comments [ , ], Greg Chabala merged the RUN commands into single layer in the package s Dockerfile [ ] thus greatly reducing the final image size. Lastly, Roland Clobus updated tool descriptions to mark that the xb-tool has moved package within Debian [ ].
reprotest is our tool for building the same source code twice in different environments and then checking the binaries produced by each build for any differences. This month, Vagrant Cascadian updated the packaging to be compatible with Tox version 4. This was originally filed as Debian bug #1042918 and Holger Levsen uploaded this to change to Debian unstable as version 0.7.26 [ ].

Distribution work In Debian, 28 reviews of Debian packages were added, 14 were updated and 13 were removed this month adding to our knowledge about identified issues. A number of issue types were added, including Chris Lamb adding a new timestamp_in_documentation_using_sphinx_zzzeeksphinx_theme toolchain issue.
In August, F-Droid added 25 new reproducible apps and saw 2 existing apps switch to reproducible builds, making 191 apps in total that are published with Reproducible Builds and using the upstream developer s signature. [ ]
Bernhard M. Wiedemann published another monthly report about reproducibility within openSUSE.

Upstream patches The Reproducible Builds project detects, dissects and attempts to fix as many currently-unreproducible packages as possible. We endeavour to send all of our patches upstream where appropriate. This month, we wrote a large number of such patches, including:

Testing framework The Reproducible Builds project operates a comprehensive testing framework (available at tests.reproducible-builds.org) in order to check packages and other artifacts for reproducibility. In August, a number of changes were made by Holger Levsen:
  • Debian-related changes:
    • Disable Debian live image creation jobs until an OpenQA credential problem has been fixed. [ ]
    • Run our maintenance scripts every 3 hours instead of every 2. [ ]
    • Export data for unstable to the reproducible-tracker.json data file. [ ]
    • Stop varying the build path, we want reproducible builds. [ ]
    • Temporarily stop updating the pbuilder.tgz for Debian unstable due to #1050784. [ ][ ]
    • Correctly document that we are not variying usrmerge. [ ][ ]
    • Mark two armhf nodes (wbq0 and jtx1a) as down; investigation is needed. [ ]
  • Misc:
    • Force reconfiguration of all Jenkins jobs, due to the recent rise of zombie processes. [ ]
    • In the node health checks, also try to restart failed ntpsec, postfix and vnstat services. [ ][ ][ ]
  • System health checks:
    • Detect Debian live build failures due to missing credentials. [ ][ ]
    • Ignore specific types of known zombie processes. [ ][ ]
In addition, Vagrant Cascadian updated the scripts to use a predictable build path that is consistent with the one used on buildd.debian.org. [ ][ ]

If you are interested in contributing to the Reproducible Builds project, please visit our Contribute page on our website. However, you can get in touch with us via:

7 September 2023

Dirk Eddelbuettel: x13binary 1.1.57-4 on CRAN: Minor Update

Release 1.1.57-4 of the x13binary package providing the X-13ARIMA-SEATS program by the US Census Bureau arrived earlier on CRAN. This release sets an explicit download timeout option value at the request of CRAN who, just like everybody else, were bitten a little by the instability at GitHub this week. Courtesy of my CRANberries, there is also a diffstat report for this release showing changes to the previous release. If you like this or other open-source work I do, you can sponsor me at GitHub.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

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